- 7× Super Bowl champion (XXXVI, XXXVIII, XXXIX, XLIX, LI, LIII, LV)
- 5× Super Bowl MVP (XXXVI, XXXVIII, XLIX, LI, LV)
- 3× NFL Most Valuable Player (2007, 2010, 2017)
- 2× NFL Offensive Player of the Year (2007, 2010)
- NFL Comeback Player of the Year (2009)
- 3× First-team All-Pro (2007, 2010, 2017)
- 2× Second-team All-Pro (2005, 2016)
- 14× Pro Bowl (2001, 2004, 2005, 2007, 2009–2018)
- 4× NFL passing touchdowns leader (2002, 2007, 2010, 2015)
- 3× NFL passing yards leader (2005, 2007, 2017)
- 2× NFL passer rating leader (2007, 2010)
- NFL completion percentage leader (2007)
- NFL 2000s All-Decade Team
- Unanimous NFL 2010s All-Decade Team
- Unanimous NFL 100th Anniversary All-Time Team
- Bert Bell Award (2007)
- Associated Press Male Athlete of the Year (2007)
- Sports Illustrated Sportsman of the Year (2005)
- 5× KCC AFC Offensive Player of the Year (2007, 2010, 2011, 2015, 2016)
- National champion (1997)
- NFL records
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